Summary on (hyper)graph tractability parameters
For my PhD research, I had to investigate various notions of (hyper)graph tractability, such as treewidth, cliquewidth, pathwidth, etc. Here is a very terse summary of what I have found about them. It is mostly my personal summary of reading this survey and some other papers, but maybe it may interest others.
To give the broad context: computer scientists are interested in solving problems on graphs, e.g., given a graph, does it have a specific property (for instance, can it be drawn without edge crossings, can it be colored with 3 colors, etc.). Some of these problems are known to be intractable in the sense of complexity theory, which means that there is probably no fast algorithm to solve them. However, many of those hard problems can be solved efficiently in the specific case of graphs that are forests, i.e., that do not have cycles.
Graph theorists have tried to understand what makes trees tractable, and to extend the notion of acyclicity ("being a forest") in two broad respects. First, by identifying broader notions for graphs, which are parameterized: a parameter k indicates how much the graph deviates from acyclicity, and the notion should collapse to acyclicity for small k. The hope is then that, for fixed k (i.e., for graphs that are notacyclic only by a small margin), we can still enjoy tractability, for instance in the sense of parameterized complexity. Second, theorists have tried to extend acyclicity from graphs to the more expressive formalism of hypergraphs, i.e., graphs where edges can connect an arbitrary number of vertices.
In all this post except where explicitly stated otherwise, we consider undirected graphs, i.e., a pair (V,E) of a set of vertices and a set of edges which are pairs of vertices.
Roadmap:
 Section 1 presents treewidth, branchwidth (essentially equivalent), and pathwidth (more restrictive, i.e., a graph's pathwidth is more than its treewidth), and treedepth, which is more restrictive than pathwidth in the same sense.
 Section 2 presents rankwidth and cliquewidth (equivalent, and less restrictive than the previous ones).
 Section 3 discusses preservation under subgraphs, minors, and other operations.
 Section 4 discusses extended definitions for hypergraphs.
 Section 5 discusses the complexity of computing these parameters.
 Section 6 discusses their applicability for the decidability of logical theories, the tractability of model checking and other such problems for expressive languages.
 Section 7 studies their use for less expressive languages: the problems of CSP, query evaluation and homomorphisms.
 Section 8 is an appendix with a remark about partial orders.
All links to scientific works are openaccess, i.e., available without a subscription. I give them as direct links, but I also give the DOI of each link at the end.
Warning: Please be aware that this summary are my personal notes: it may contain errors and should not be taken at face value. Please let me know if you find any bugs.
Acknowledgements: Thanks to Pierre Senellart, Mikaël Monet and Robin Morisset for proofreading and comments.
Treewidth, pathwidth, branchwidth
Treewidth (tw)
Treewidth is the most common measure, and can be defined in multiple different ways. The treewidth of a graph G is the smallest k such that it admits a tree decomposition of width k in one of the following senses:

Formally: we can associate a tree T to G (called the tree decomposition), with each node of T (called bag) labeled by a subset of the graph vertices, such that:
 for each edge of G, its endpoints cooccur in some bag of T
 for each vertex of G, the nodes of T where it occurs form a connected subtree in T
The width of the tree decomposition T is k−1 where k is the maximal number of vertices in a bag of T.
While tree decompositions are not oriented, it is often convenient to pick a root and see them as rooted trees.

As a decomposition scheme. Trees can be decomposed by picking a separator formed of two adjacent vertices, removing the edge between them, and decomposing recursively each connected component: in each component, you can pick a separator that includes the vertices of the parent separator which are also in that component.
As a generalization, graphs of treewidth k can be decomposed by picking a separator of k+1 vertices, removing edges between them, and decomposing recursively each connected component, requiring that each component's separator includes the vertices of the parent separator which are part of the component. The tree of the separators chosen in this process is a tree decomposition of the instance, because the separators have the right size, cover all edges, and whenever a vertex occurs in a separator it will occur in all descendent separators until we reach a component where the vertex no longer occurs.
Conversely, when looking at any nonroot bag b of a tree decomposition T, considering the subgraph G1 of the decomposed graph formed of the vertices occurring in b and its descendants (the subtree Tb of b rooted at T), and G2 the subgraph of the vertices occurring in the other bags, the common vertices between G1 and G2 are those shared between b and its parent (often called an interface), and removing those in G disconnects G1 and G2 (any other path connecting them could not be legally reflected in the decomposition). So Tb can be recursively understood as a tree decomposition of G1, which has been disconnected from the rest of G.
This explanation with pictures may help you understand what I mean.

As a divide and conquer scheme. Many problems on a rooted tree can be solved by a dynamic programming algorithm that solves the problem on any subtree given the solution to its child subtrees; this is usually just thought of as a bottomup computation. In graphs of treewidth k, following the above scheme (or a rooted tree decomposition) gives you a way to solve problems on the graph with a similar divideandconquer dynamic programming scheme.
Again, this is nicely covered by the explanation linked above.

As a pursuitevasion game, where "cops" use a decomposition of the graph to corner and catch a "robber". For more details, see hlineny2007width, Section 5.7.
Forests have treewidth 1 (so "having treewidth 1" means "being acyclic"), cycles have treewidth 2, cliques with k vertices have treewidth k−1, but grids illustrate that graphs may be planar but have a high treewidth: a k by k grid has treewidth k.
In terms of structural assumptions, it is easily seen that tree decompositions can be rewritten to ensure that each tree node has degree at most 3, i.e., degree at most 2 when we see T as a rooted tree. Further, tree decompositions can be rewritten to have logarithmic height, at the cost of multiplying the treewidth by a constant; see bodlaender1988nc.
A variant of tree decompositions are simplicial decompositions (see diestel1989simplicial), where we additionally require that for every pair of adjacent bags in the tree decomposition T, letting X be the vertices that occur in both bags, then X is a complete subgraph of the graph G.
Pathwidth (pw)
Pathwidth is a variant of treewidth where the underlying tree in the formal definition is required to be a path graph rather than a general tree. It has many alternative characterizations, in particular in terms of overlapping intervals.
I won't be coming back to pathwidth later, but to contrast it with treewidth, for any graph G:
 tw(G)≤pw(G): immediate as one notion is more restrictive than the other;
 pw(G)=O(tw(G)logG): see bodlaender1998partial, Corollary 24.
So "having bounded pw" is strictly more restrictive than "having bounded tw".
Branchwidth (bw)
Branchwidth can be defined as follows. Let G=(V,E) be a graph. Given a partition of its edges E=E1⊔E2, call its weight the number of vertices incident both to an edge in E1 and an edge in E2. A branch decomposition of width k of G is a subcubic tree (nodes have degree either 1 or 3) where each leaf is labeled bijectively by an edge of G, and for each edge of the tree, considering E1⊔E2 where E1 and E2 are the edges that annotate each half of the tree, the weight of this partition is at most k.
Branchwidth is less used than treewidth in computer science, but it has the nice property that a variant of the definition yields the notion of rankwidth (see later). Further, it generalizes to hypergraphs (see later), and it generalizes to matroids (I won't give more details).
hlineny2007width (Section 3.1.1) gives a description^{1} of graphs of bw ≤2. Further, from robertson1991graph10, cited and proved in hlineny2007width, Theorem 3.1, we have, for any graph G with branchwidth >1: bw(G)≤tw(G)+1≤⌊1.5⋅bw(G)⌋. Hence, "having bounded tw" and "having bounded bw" are equivalent.
Treedepth
This is an addition to the original post
Treedepth is defined as follows. An elimination forest F of a graph G=(V,E) is a forest (i.e., a collection of rooted trees) on V that ensures that for any {x,y}∈E, one of the nodes for x and y in F is an ancestor of the other in F (or, equivalently, there is a path from the root of F to a leaf that covers both x and y). The depth of an elimination forest F is the height of F in the standard sense (i.e., the maximal height of a tree of F). The treedepth of G is the minimal depth d such that G has an elimination forest F of depth d.
I will not describe the notion of treedepth in more detail, but, to connect it with the previous notions, we know, by Lemma 11 of bodlaender1995approximating, that, for any graph G, we have pw(G)≤td(G). However, path graphs have treedepth which is logarithmic in their size (with the elimination forest given as the tree of a binary search), but have constant pathwidth. So "having bounded td" is strictly more restrictive than "having bounded pw" which is strictly more restrictive than "having bounded tw".
Rankwidth and cliquewidth
Rankwidth (rw)
Rankwidth is defined just like branchwidth, except that we consider vertex partitions V=V1⊔V2, whose weight is the rank of the adjacency matrix from V1 to V2 (taken as a submatrix of the full graph's adjacency matrix): and we consider subcubic trees where leaves are labeled by graph vertices rather than graph edges.
Rankwidth is less than branchwidth: rw(G)≤max(1,bw(G)) as shown in oum2007rank. Hence, "having bounded bw" implies "having bounded rw".
Graphs with rankwidth 1 are the distancehereditary graphs, as shown in oum2005rank.
Cliquewidth (cw)
A clique decomposition of width k, or kexpression, in an expression over the following operations, i and j denoting any colors in {1,…,k}:
 create the graph with one isolated vertex labeled by i
 change all vertices of color i to color j
 connect all vertices of color i to those of color j (with j≠i, so no selfloops)
 take the disjoint union of two graphs constructed by such an expression
A graph has cliquewidth k if some coloring of it can be obtained by a clique decomposition.
Graphs with cliquewidth 1 are those with no edges, and graphs with cliquewidth 2 are the cographs. The k by k grid has cliquewidth k+1 by (golumbic2000clique).
Cliquewidth can be connected to the modular decomposition of graphs. Further, there are variants such as symmetric cliquewidth, with "bounded cw" equivalent to "bounded scw", see hlineny2007width, section 4.1.3.
Cliquewidth is connected to rankwidth (oum2006approximating): rw(G)≤cw(G)≤21+rw(G)−1. Hence, "having bounded cw" and "having bounded rw" are equivalent, though the rankwidth bound can be exponentially larger.
Cliquewidth is connected to treewidth: we have cw(G)≤3⋅2tw(G)−1 by hlineny2007width^{2}, section 4.2.6. Hence, "having bounded tw" implies "having bounded cw", though the bound may again be exponential. Conversely, tw(G) can be bounded as a function of cw(G) and of the degree of G (kaminski2009recent, Proposition 2 a), so "having bounded cw" and "having bounded tw" are equivalent on graph families of bounded degree. The dependence on degree disappears for graph families that exclude any fixed graph as a minor (Proposition 2 b).
Preservation under graph operations
Subgraphs and induced subgraphs
A subgraph of a graph G is obtained by keeping a subset of the edges and vertices of G. Further, it is an induced subgraph if the edges kept are exactly the restriction of those of G to the kept vertices (i.e., no edge between kept vertices was removed).
A property is Sclosed (resp. Iclosed) if, when a graph has it, every subgraph (resp. induced subgraph) also does.
Minors and topological minors
A minor of a graph can be obtained from that graph by removing edges and vertices and contracting edges. Alternatively, it is witnessed by mapping the vertices v of the minor G′ to disjoint subsets s(v) of vertices of the graph G, and mapping each edge (u,v) of G′ to an edge between s(u) and s(v) in G.
A topological minor maps each vertex v of G′ to a single vertex s(v) of G, and maps edges (u,v) of G′ to vertexdisjoint paths from s(u) to s(v) in G: equivalently, a subdivision of G′ is isomorphic to a subgraph of G. Clearly if G′ is a topological minor of G then it is a minor of G.
We define Mclosed and Tclosed for minors and topological minors as we defined Sclosed and Iclosed.
In summary, from makowsky2003tree^{3}:
 Mclosed implies Tclosed, Sclosed, Iclosed;
 Tclosed implies Sclosed, Iclosed;
 Sclosed implies Iclosed;
 No other implication holds.
Monotonicity of our definitions
Standard graph acyclicity is Mclosed. Hence, it is natural to wonder whether our other parameters also are.
 "having treewidth ≤k" is Mclosed (as can be seen by applying deletions and merges to the tree decomposition).
 "having pathwidth ≤k" is Mclosed (same argument).
 "having branchwidth ≤k" is Mclosed (hlineny2007width, Prop 3.2).
 "having cliquewidth ≤k" is Iclosed courcelle1990upper but obviously not Sclosed (complete graphs have cliquewidth ≤2 but their subgraphs cover all graphs) nor Tclosed.
 "having rankwidth ≤k" is Iclosed but not Sclosed for the same reasons.
Rankwidth is, however, preserved by the graph operation of vertexminor (oum2005rank).
Other operations
Cliquewidth and rankwidth behave well under graph complementation: complementing can at most double the cw, and adds or removes at most 1 to the rw (quoted in hlineny2007width, section 4.2.1). By contrast, no such bounds are possible for treewidth and hence rankwidth (consider the graphs with no edges).
Treewidth, branchwidth, pathwidth, cliquewidth, rankwidth, can be computed on a graph with multiple connected components as the max of the same measure over each of the connected components.
Adding or deleting k vertices or k edges can only make rankwidth and cliquewidth vary by at most k (hlineny2007width). The same holds for treewidth (immediate as each vertex addition in a tree decomposition can only affect the width by at most 1).
For Sclosed families, "having bounded cw" and "having bounded tw" are equivalent (makowsky2003tree, Proposition 7, attributed to courcelle1995logical which seems unavailable online).
Hypergraphs
Hypergraphs generalize graphs by allowing hyperedges that include an arbitrary number of vertices.
We will sometimes consider instances, whose hyperedges (called facts) are allowed to have a label (called the predicate or relation, which has a fixed arity) and where the occurrences of vertices in facts may be labeled as well: a fact is written A(a1,…,an), where A is the predicate, n is the arity, and the ai need not be all different. Hence, an instance in logical terms is a structure for some relational signature. In this context it is natural to assume that the maximal arity (number of vertices per hyperedge) is bounded by a constant, though this assumption is not usually done when working on vanilla hypergraphs.
From hypergraphs to graphs
The following discussion of how to get from a hypergraph to a graph is from hlineny2007width. The second and third method can be applied to (nonhyper)graphs rather than hypergraphs, to get a different graph.

The primal graph or Gaifman graph P(H) of a hypergraph H is the graph on the vertices of H where two vertices are connected iff they cooccur in a hyperedge. In other words, hyperedges are encoded as cliques. The primal graph of a (nonhyper)graph is the graph itself.

The incidence graph I(H) of a hypergraph H is the bipartite graph on the vertices and edges of H where a vertex is connected to an edge if the vertex occurs in that edge. In other words, hyperedges are encoded as a vertex connected to all the vertices that it contains.
The incidence graph of a (nonhyper)graph amounts to subdividing each edge once.

The line graph L(H) of a hypergraph H is the graph on the hyperedges of H where two hyperedges are connected iff they share a vertex. In other words, the vertices are encoded as cliques on the hyperedges. Alternatively, the line graph is the primal graph of the dual hypergraph.
This construction also makes sense (i.e., is not the identity) for (nonhyper)graphs, where it is also called the line graph.
We will see in a later section how bounds on various width notions can be obtained through these transformations (for graphs and hypergraphs).
Hypergraph acyclicity
Before trying to come up with parameterized notions, there have been attempts to formalize crisp acyclicity notions for hypergraphs. See Wikipedia or fagin1983degrees for sources to the claims and more details. Each notion in the list is implied by the next notion (so they are given from the least restrictive to the most restrictive) and none of the reverse implications hold (fagin1983degrees, Theorem 6.1). Further, they all collapse to the usual notion of acyclicity (i.e., "being a forest") for hypergraphs that are actually (nonhyper)graphs (i.e., all hyperedges have size 2).

αacyclicity: we can reduce the hypergraph to the empty hypergraph with four operations: remove an isolated vertex; remove a vertex in a single hyperedge; remove a hyperedge contained in another; remove empty hyperedges.
Equivalently, a hypergraph is αacyclic iff it has a join forest, which is a forest of join trees, which are a special form of tree decomposition: we require that, for each bag, there is a hyperedge containing exactly the elements of the bag. There are other equivalent characterizations of αacyclicity which I will not define.
We can test in linear time whether an input hypergraph is αacyclic, and if so compute a join forest: see Theorem 5.6 of flum2002query. Counterintuitively, αacyclicity can be gained when adding hyperedges (think of a hyperedge covering all vertices), and hence also lost when removing vertices.

βacyclicity: all subhypergraphs of the hypergraph (including itself) are αacyclic; this is obviously more restrictive than αacyclicity, in fact strictly so, and is testable in PTIME

γacyclicity: I won't define it here; see fagin1983degrees.

Bergeacyclicity: the incidence graph of the hypergraph is acyclic in the standard sense; this is obviously testable in linear time and is strictly more restrictive than γacyclicity.
We now turn to acyclicity definitions with a parameter k. Following standard usage, we will talk of the treewidth of a hypergraph H to mean the treewidth of its primal graph P(H). However, by hlineny2007width, Section 5.2, there are αacyclic hypergraphs which have unbounded treewidth, i.e., their primal graphs have unbounded treewidth; and ditto for the notions of incidence graphs and of line graphs. This motivates the search for specific hypergraph definitions of treewidth (and of the other notions presented before).
Querywidth, hypertreewidth, generalized hypertreewidth
A decomposition of a hypergraph, for all three notions of width presented here, is a tree decomposition of its primal graph: however, the vertices of each bag are additionally covered by a set of hyperedges, and the width of the decomposition is redefined to mean the maximal number of hyperedges in a bag (where we do not subtract 1, unlike in the definition of treewidth). The differences are:
 querywidth: the hyperedges of each bag must exactly cover the vertices of the bag.
 hypertreewidth: the hyperedges of each bag must cover the vertices of the bag and they cannot include additional vertices if those occur in strict descendants of the bag.
 generalized hypertreewidth: the hyperedges must cover the vertices, no further restriction is imposed.
Thus ghtw(H)≤tw(P(H)) and ghtw(H)≤htw(H)≤qw(H). In fact qw(H)≤1+tw(I(G)) (chekuri2000conjunctive, Lemma 2): a tree decomposition of the incidence graph is in particular a query decomposition when restricting the attention to the vertices of the incidence graph that code hyperedges, and the "+1" is because the definition of treewidth subtracts 1 to bag sizes.
Further, all three notions are within a factor 3 of each other (adler2007hypertree, gottlob2007generalized), so that "having bounded qw", "having bounded htw", and "having bounded ghtw" are all equivalent.
A (nonempty) hypergraph H is αacyclic iff ghtw(H)=htw(H)=qw(H)=1 as mentioned in gottlob2014treewidth.
All three notions are bounded by ⌊n/2⌋+1 on hypergraphs with n vertices (gottlob2005computing, Theorem 3.5 and subsequent remarks).
From the join tree definition, it is obvious that a hypergraph is αacyclic iff it has querywidth equal to 1.
Last, it is obvious by definition that if the arity is bounded by a constant a, then we have ⌊tw(P(H))/a⌋≤ghtw(H). Hence, in this case, "having bounded tw" is equivalent to "having bounded htw" (and ditto for the other two hypergraph notions).
Fractional hypertreewidth
This is an addition to the original post
The notion of fractional hypertreewidth is defined in grohe2014constraint (not available online) and in marx2009approximating. It is again defined via tree decompositions of the primal graph of the hypergraph, but this time we annotate them with weighting sets of hyperedges: for each bag b of the tree decomposition, we have a weighting function wb for bag b that maps each hyperedge e of the hypergraph to a nonnegative real number wb(e). We require that, for every bag b, the function wb covers the set S of the vertices contained in b, namely, for each v∈S, the sum wb(e) over all hyperedges e of the hypergraph that contain v must be at least 1. The width of these augmented tree decompositions is the maximum, over all bags b, of the sum wb(e) over all hyperedges; and the fractional hypertreewidth of a hypergraph is the smallest possible width of such a decomposition.
Of course, the fractional hypertreewidth is less than the generalized hypertreewidth, as generalized hypertreewidth is obtained by restricting the decompositions to use weight functions having values in {0,1}.
Hyperbranchwidth
Hyperbranchwidth (adler2007hypertree) is defined like branchwidth, with partitions of hyperedges, except that the weight of a hyperedge partition is not its number of incident vertices, but the number of hyperedges required to cover its incident vertices (not necessarily exactly, i.e., we may cover a superset of them). We have (adler2007hypertree, Lemmas 16 and 17):
 hbw(H)≤ghw(H) for any hypergraph H
 ghw(H)≤2hbw(H) for any nontrivial hypergraph H (not all hyperedges are pairwise disjoint)
Hence "bounded hyperbranchwidth" and "bounded generalized hypertreewidth" are equivalent.
Apparently hyperbranchwidth is a problematic function because it is not submodular, unlike the functions used for branchwidth and rankwidth.
I do not know whether we can define variants of hyperbranchwidth with partition weight counted as the number of hyperedges required to cover exactly the vertices, and connect this to querywidth.
Cliquewidth
Cliquewidth is usually defined for hypergraphs as that of the incidence graph, in which case we have qw(H)≤cw(H), and there are hypergraphs with bounded querywidth but unbounded cliquewidth. Hence "having bounded querywidth" (and the other notions) is weaker than "having bounded cliquewidth". (gottlob2004hypergraphs)
Connections via transformations
In some cases, bounds on graphs or hypergraphs relate to bounds on the incidence, line, and primal graph.
The branchwidth of a (nonhyper)graph G is the rankwidth of its incidence graph, up to removing 1: bw(G)−1≤rw(I(G))≤bw(G) (oum2007rank).
The treewidth of a (nonhyper)graph can be used to bound the cliquewidth of its line graph: .25⋅(tw(G)+1)≤cw(L(G))≤2tw(G)+2 (gurski2007line, Corollary 11 1., and Theorem 5).
The treewidth of a (nonhyper)graph is exactly that of its incidence graph: tw(G)=tw(I(G)) (kreutzer2009algorithmic, Theorem 3.22). A similar result for cliquewidth is known assuming bounded vertex degree (kaminski2009recent, Proposition 8). Further, for any hypergraph H, we have tw(H)≤tw(I(H))+1 (gradel2002back), where we recall that the treewidth of a hypergraph was defined as that of its primal graph.
I am not aware of results connecting width measures on hypergraph to measures on the dual hypergraph.
Directed graphs
I file "directed graphs" in the same category as "hypergraphs", because it is about having a richer incidence relation. Width definitions for directed graphs are interesting because the usual acyclicity notion for directed graphs is different from that of undirected graphs (i.e., "being a forest", which we studied so far). This is an interesting area with lots of recent research that I will not attempt to summarize here. See hlineny2007width for a survey.
I will just note that clique decompositions can extend to directed graphs, where the operation that creates edges is meant to create directed edges (hlineny2007width, section 4.1.1).
Complexity of recognition
Definitions
Having studied all of these definitions, it is a natural question to ask, given an (hyper)graph, how can we compute its *width. I will only deal with the parameterized width notions; for the crisp acyclicity definitions, I have already given the complexity of recognition when defining them in this section.
For the parameterized notions, we must be careful in the problem definition. There are two possible tasks:
 Just determine the *width of the input (hyper)graph
 Determine the *width and compute a *decomposition of the input
Further, it is often useful to study a parameterized version of these decision problems. Hence, we consider two possible kinds of inputs; the first is of course harder than the second:
 We are only given an input (hyper)graph and the algorithm must solve the task.
 We have fixed k∈N; the algorithm is given a (hyper)graph with the promise that its *width is at most k. In other words, if its width is >k the algorithm may do anything, otherwise it must solve the task.
In the second phrasing, example situations are:
 the problem gets NPhard whenever the parameter k is given a sufficiently large value;
 for every k, the problem can be solved in PTIME, i.e., for some function f:N→N, in O(nf(k)); this is the parameterized complexity class XP if f is computable (in our case it always will be);
 the problem can be solved in complexity O(f(k)⋅nc) for a fixed (computable) function f and a fixed constant c∈N independent of k, in which case we say that the problem is fixedparameter tractable (FPT) (and we may talk of linearFPT, quadraticFPT, etc., to reflect the value c).
RobertsonSeymour
The wellknown RobertsonSeymour theorem shows that any Mclosed property can be characterized by a finite set of forbidden minors. As testing whether a fixed graph G′ is a minor of an input graph G can be performed in quadratic time (kawarabayashi2012disjoint)^{4}; this implies the existence^{5} of a quadratic time test for any Mclosed property. We will use this general result later.
Results
When k is fixed and a graph G is given as input:
 For treewidth, branchwidth, pathwidth:
 Determining the value of the treewidth, branchwidth, and pathwidth are quadratic FPT because "having treewidth ≤k" and "having branchwidth ≤k" are Mclosed, so we can apply the RobertsonSeymourbased reasoning above.
 For treewidth and pathwidth, there is a linear FPT algorithm to compute the width and a decomposition (bodlaender1996linear, the parameter being exponential in the width). The algorithm is infeasible in practice due to huge constants. For treewidth, it is preferable in practice to use an algorithm that computes a decomposition of a graph G of treewidth k in time O(Gk+2) (flum2002query, end of Section 3), or various heuristics for approximation (see at the end of the section).
 Branchwidth can be computed, along with an optimal branch decomposition, in FPT linear time (bodlaender1997constructive)
 For rankwidth, cliquewidth:
 Rankwidth, and an optimal decomposition, can be computed in cubic FPT time (hlineny2007finding).
 It is PTIME to determine the cliquewidth for k≤3 (corneil2012polynomial, requires a subscription); otherwise this is still open.
For hypergraph acyclicity measures (αacyclicity, etc.), refer back to the paragraph where they are defined.
For hypergraph measures, when k is fixed and a hypergraph H is given as input:
 It is NPcomplete to decide whether an input hypergraph H has generalized hypertreewidth 3 (gottlob2007generalized). For 2, the complexity was open but NPcompleteness is shown in the recent preprint fischl2016general
 It is NPcomplete to decide whether an input hypergraph H has querywidth 4 (gottlob2002hypertree).
 For any k, we can determine in PTIME whether an input hypergraph H has hypertreewidth ≤k, and if so compute a decomposition (gottlob2002hypertree); however this is unlikely to be in FPT (gottlob2005hypertree).
 We can test in linear time whether it has generalized hypertreewidth 1, querywidth 1, or hypertreewidth 1, because this is equivalent to it being αacyclic (mentioned in gottlob2014treewidth).
 It is NPcomplete to test whether an input graph has fractional hypertreewidth ≤2, as shown in the recent preprint fischl2016general
When a graph G is given as input, with no bound on the parameter k:
 Treewidth is NPhard to compute on general graphs; it is computable in PTIME on chordal graphs (bodlaender2007combinatorial, after Lemma 11); on planar graphs, this is open.
 Branchwidth is NPhard on general graphs, but on planar graphs it can be determined and a decomposition constructed in PTIME (seymour1994call; cubic bound shown in gu2005optimal, unavailable without subscriptions).
 Cliquewidth is NPhard to compute (fellows2009clique).
 Fractional hypertreewidth can be approximated in PTIME: given a hypergraph H, we can compute in PTIME a fractional hypertree decomposition of width O(w3) of H, where w is the real fractional hypertreewidth: see marx2009approximating.
There are practical implementations to compute tree decompositions of graphs, trying to compute the optimal treewidth or an approximation thereof. A fellow student of mine successfully used libtw. See Section 4.2 of bodlaender2007combinatorial for more details about how treewidth can be approximated (including, e.g., the use of metaheuristics). See also bodlaender2009treewidth.
Logical problems
Logics
Propositional logic (Boolean connectives) is the logic allowing variables and Boolean connectives: negation, conjunction, disjunction. Propositional logic formulae are often given in conjunctive normal form (CNF), i.e., a conjunction of clauses which are disjunctions of literals (variables or negated variables); or in disjunctive normal form (a disjunction of conjunctions of literals).
(Functionfree) firstorder logic (FO) is the logic obtained from propositional logic by allowing existential and universal quantifiers.
Monadic secondorder logic (MSO) is the logic obtained from FO by further allowing existential and universal quantification over sets (unary relations).
Monadic secondorder logic with edge quantification (MSO2) is the logic on graphs that further allows quantification over sets of edges. Its generalization to hypergraphs (quantifying over relations of arbitrary arity) is called guarded secondorder logic (GSO). In GSO, quantifications over relations of arity >1 are semantically restricted to always range over guarded tuples, i.e., tuples of values that already cooccur in a hyperedge. Likewise, quantification over sets of edges in MSO2 means quantifications over edges in the actual structure, not quantification over arbitrary pairs. However, this should not be confused with guarded logics, where firstorder quantification is restricted as well: MSO2 and GSO without secondorder quantification is exactly FO, it is not restricted to the guarded fragment of FO.
It turns out that MSO2 over graphs is equivalent to MSO over the incidence graph of these graphs, where the incidence graph is assumed to be labeled in a way that allows the logic to distinguish between vertices and edges. More generally, GSO over hypergraphs (or labeled hypergraphs, i.e., relational signatures) is equivalent to MSO on the incidence instance (gradel2002back, Proposition 7.1).
An example of a proposition that can be expressed in MSO2 but not MSO is the existence of a Hamiltonian cycle in a graph (see kreutzer2009algorithmic, Section 3.2).
Problems
The satisfiability problem for a logic L and class of (hyper)graphs C asks, given a formula ϕ∈L, whether it has a model in C.
The satisfiability problem for MSO2 sentences, MSO sentences, and actually FO sentences is undecidable over general graphs (even over finite graphs, in fact; see Trakhtenbrot's theorem which is the corresponding result for validity, i.e., the negation of satisfiability of the negated formula). For propositional logic, the problem SAT of deciding whether a propositional formula is satisfiable is NPcomplete.
The modelchecking problem for a logic L and class of (hyper)graphs C, asks for a fixed formula ϕ∈L with no free variables, given an input (hyper)graph G∈C, whether G satisfies ϕ in the logical sense. I will not study the version of model checking where both the formula and (hyper)graph are given as input, which is of course considerably harder.
The modelchecking problem for MSO in general is hard for every level of the polynomial hierarchy (ajtai2000closure). A simple example that shows NPhardness on graphs is asking whether an input graph can be colored with 3 colors, which is MSOexpressible.
A variant of the modelchecking problem is the counting problem that asks, for a formula with free variables, given a (hyper)graph, how many assignments of the free variables satisfy the formula; and the enumeration problem, that requests that the satisfying assignments be computed (with complexity measured as a function of the size of the output, or measured as the maximum delay between two enumerated outputs).
Monadic second order
For satisfiability, it is known that, for any k, satisfiability for MSO2 over the class of graphs of treewidth ≤k is decidable (seese1991structure); this implies the same for branchwidth (an equivalent claim) and pathwidth (a weaker claim). Conversely, it is known that for any class of graphs of unbounded treewidth, satisfiability for MSO2 is undecidable: this relies on a different result by Robertson and Seymour, the grid minor theorem, to extract large grid minors from unbounded treewidth graphs, and using the fact that the MSO theory of grids is undecidable. For details see kreutzer2009algorithmic, Section 6.
Further, it is known that, for any k, satisfiability for MSO over the class of graph of cliquewidth ≤k is decidable. The converse result was conjectured in seese1991structure and a weakening was proven in courcelle2007vertex: it shows the converse result but for a logic further allowing to test that a set variable of MSO is interpreted by a set of even cardinality. Also, it is already known that a class of graphs has bounded cliquewidth iff it is interpretable in the class of colored trees (cited as Lemma 4.22 in kreutzer2009algorithmic).
For model checking, it is known that the problem for MSO2 on bounded treewidth structures is FPT linear (with the formula and the width bound as parameter), see kreutzer2009algorithmic, Section 3.4; this is what is known as Courcelle's theorem. The model checking problem for MSO on bounded cliquewidth structures is FPT cubic, the bottleneck being the computation of the rank decomposition: see kreutzer2009algorithmic, Section 4.3; this is also due to Courcelle. The FPT tractability (not linearity) of MSO2 on bounded treewidth reduces to the same result for MSO and bounded cliquewidth by going through the incidence graph (see these slides, slide 8).
The tractability of MSO on bounded cliquewidth does not extend to MSO2. Indeed, some problems definable in MSO2 but not in MSO are known to be W[1]hard when parameterized by cliquewidth, e.g., Hamiltonian cycle, see fomin2009clique and fomin2010algorithmic. Further, it is known that there is a MSO2 formula such that model checking on the class of all unlabeled cliques (which has bounded cliquewidth) is not in PTIME, assuming P1≠NP1 (those are unary languages): see Theorem 6 of courcelle2000linear.
For modelchecking, the constant factor that depends on the fixed formula ϕ is nonelementary even for a formula in FO (frick2004complexity).
The tractability results for model checking on bounded treewidth structures are usually shown using interpretability results to translate the logic on the instances to a logic on the (suitably annotated) tree decompositions (see kreutzer2009algorithmic), and using a connection from MSO on trees to tree automata that originated in thatcher1968generalized (subscription required). See flum2002query for a summary. A connection to automata for bounded rankwidth structures was more recently investigated in ganian2010parse.
The necessity of bounded treewidth for the tractability of modelchecking under closure assumptions (i.e., Sclosed, Mclosed, etc.) was studied in makowsky2003tree. The Sclosed case was refined in kreutzer2011lower (for MSO2), and in ganian2012lower (for MSO but additionally assuming closure under vertex labellings).
The problem of counting the number of assignments to a MSO formula is also known to be linear on bounded treewidth (hyper)graphs (arnborg1991easy), and computing the assignments (the enumeration problem) can be done in time linear in the input and in the output (flum2002query). For results on constantdelay enumeration, see, e.g., segoufin2012enumerating.
Firstorder
I am not aware of conditions that try to ensure decidability of FO satisfiability (in the spirit of those for MSO and MSO2 above), so I focus on model checking.
The modelchecking problem for FO is in PTIME, in fact in AC^{0}, but this does not imply that it is FPT (where the query is the parameter): the degree of the polynomial in the (hyper)graph depends in general on the formula.
It is more complicated for FO than for MSO to find criteria that guarantee that FO model checking is FPT, because of locality properties of FO. In particular, there are notions of locally treedecomposable structures (frick2001deciding), which ensure FPT linearity of FO model checking in more general situations.
For more about FO, see Section 7 of kreutzer2009algorithmic, noting that Open Problem 7.23 has now been solved in the affirmative (dvorak2013testing).
The problem of enumeration for firstorder is also studied in segoufin2012enumerating.
Propositional logic
The modelchecking problem for propositional formulae is obviously always tractable. However, it is more interesting, given a propositional formula in normal form, encoded as an instance, to determine whether it is satisfiable (SAT), and count the number of satisfying assignments (#SAT).
The standard way to represent a conjunctive normal form formula is as a bipartite graph between clauses and variables with colored edges indicating whether a variable occurs positively or negatively in a clause (see ganian2010better, Definition 2.7). It is then known that SAT and #SAT are FPT if this graph has bounded treewidth or if it has bounded rankwidth (see ganian2010better and references therein).
Tractability for #SAT is known for other cases, e.g., when the standard representation of the formula as a hypergraph is βacyclic (brault2014understanding).
Query evaluation and constraint satisfaction problems
Problems
This section studies the constraint satisfaction problem, formalized as the problem CSP of deciding, given two relational instances I1 and I2, whether there is a homomorphism from I1 to I2, i.e., an application mapping the elements of I1 to those of I2 such that each fact (hyperedge) of I1 exists in I2 when mapped by the homomorphism; as well as a counting variant that asks how many such homomorphisms exist.
The CSP problem is also studied in database theory, seen as Boolean conjunctive query (CQ) evaluation: a Boolean CQ is an FO sentence consisting of an existentially quantified conjunction of atoms. It is clear that a CQ Q is satisfied in an instance I iff there is a homomorphism from IQ to I where IQ is the canonical instance associated to Q.
One problem phrasing is when both I1 and I2 are given as input, which I will call the combined complexity approach. In this case, it is sensible to restrict I1 and I2 to live in fixed (generally infinite) classes C1 and C2, and study how the choice of class influences the complexity.
Another problem phrasing, common in database theory, is when one of C1 and C2 is a singleton class, so we are in one of two settings:
 data complexity: I1 is a fixed structure and I2 is the input
 query complexity: I2 is a fixed structure and I1 is the input
The question then becomes how the complexity of the CSP problem evolves depending on the fixed structure, and on the class in which the input structures may be taken; so this is really the combined complexity approach but with one of the classes being a singleton (so the corresponding structure is effectively fixed rather than given as input).
Results
Without any restriction, the CSP problem is clearly in NP in combined complexity (guess the homomorphism and check it) and its counting variant is in #P (count nondeterministically over all mappings that are checked to be homomorphisms). The CSP problem is easily seen to be NPhard in query complexity for very simple I2, even when C1 is the class of graphs: fixing I2 to be a triangle, an input I1 has a homomorphism to I2 iff it is 3colorable. For any fixed I1, the data complexity of the CSP problem when C2 is all structures is in AC^{0} from FO model checking, but it is W[1]complete (papadimitriou1999complexity, Theorem 1) and hence unlikely to be in FPT.
For arbitrary I1, data complexity becomes FPT when the input instances I2 are restricted to have bounded treewidth or bounded cliquewidth, from the results on FO.
Combined complexity becomes LOGCFLcomplete (and hence in PTIME) when C2 is a class of bounded querywidth structures, or structures of bounded degree of cyclicity (yet another definition), and they are given with a suitable decomposition (gottlob2001complexity). This generalizes an earlier analogous result for αacyclic queries (yannakakis1981algorithms, seems unavailable online). For bounded treewidth or bounded hypertreewidth, the same result holds but the decomposition can even be computed in LOGCFL, so it doesn't need to be given. The PTIME membership still holds when C2 is a class of bounded fractional hypertreewidth structures (grohe2014constraint, unavailable online).
For hypergraphs of fixed arity, assuming that FPT≠W[1], it is known that the combined complexity where C2 is all structures is in PTIME iff C1 has bounded treewidth modulo homomorphic equivalence. This result generalizes to the problem of counting the number of homomorphisms (dalmau2004counting). In cases where C1 satisfies this condition, the CSP problem is FPT with the parameter being the size of I1. A trichotomy result for the complexity in such cases is given in chen2013fine, including for counting.
When restricting C1 and C2 to graphs (not hypergraphs), an analogous result is known for combined complexity when C1 is all structures: tractability holds iff C2 is bipartite (grohe2007complexity), otherwise NPcompleteness holds. The FederVardi conjecture claims that there is an analogous dichotomy even when C1 and C2 can be hypergraphs rather than graphs (i.e., the query complexity of CSP is never, e.g., in NPI). Solutions to the problem have been proposed: see here.
Partial order theory
As bonus material, because I love partial order (poset) theory: an unconventional way to look for tractability parameters on graphs is to look at tractability parameters on posets and look at the (directed) graphs defined by the transitive reduction of these posets, namely, their Hasse diagrams; and look at the cover graph which is the undirected version of the Hasse diagram.
There has been recent work connecting the tractability measure of order dimension on posets to graph measures on the cover graph. Here are results, for any poset P with cover graph G:
 If tw(G)≤2 then dim(P)≤1276 (joret2015dimension)
 There are posets with tw(G)=3 but dim(P) is unbounded (joret2015dimension)
 If G is planar and the height of P is bounded then dim(P) is bounded (cited in joret2015dimension)
 If both tw(G) and the height of P are bounded then so is dim(P) (joret2015tree)
Last, a note about something that confused me: imposing that a poset is seriesparallel is not the same as imposing that its cover graph is a seriesparallel graph. The Nshaped poset, which is the standard example of a nonseriesparallel poset, but its cover graph is just a path graph. Hence seriesparallel posets intrinsically rely on directionality.
List of DOIs
To ensure that the references in this article can still be followed even if some preprints are removed from the Web, here is the DOI of the citations, in the order in which they appear in the text.
 hlineny2007width: 10.1093/comjnl/bxm052
 bodlaender1988nc: 10.1007/3540507280_32
 diestel1989simplicial: 10.1016/0012365X(89)900848
 bodlaender1998partial: 10.1016/S03043975(97)002284
 robertson1991graph10: 10.1016/00958956(91)90061N
 oum2007rank: 10.1002/jgt.20280
 oum2005rank: 10.1016/j.jctb.2005.03.003
 golumbic2000clique: 10.1142/S0129054100000260
 oum2006approximating: 10.1016/j.jctb.2005.10.006
 kaminski2009recent: 10.1016/j.dam.2008.08.022
 makowsky2003tree: 10.1016/S03043975(02)004498
 courcelle1990upper: 10.1016/S0166218X(99)001845
 courcelle1995logical: I couldn't locate the article or a DOI. Full reference from makowsky2003tree: B. Courcelle, J. Engelfriet, A logical characterization of the sets of hypergraphs defined by hyperedge replacement grammars, Math. Systems Theory 28 (1995) 515–552.
 fagin1983degrees: 10.1145/2402.322390
 chekuri2000conjunctive: 10.1016/S03043975(99)002200
 adler2007hypertree: 10.1016/j.ejc.2007.04.013
 gottlob2007generalized: 10.1145/1265530.1265533
 gottlob2014treewidth: in a book with ISBN 9781107025196
 gottlob2005computing: 10.1145/1065167.1065187
 grohe2014constraint: not available online, DOI 10.1145/2636918
 marx2009approximating: Full reference: D. Marx, Approximating fractional hypertree width, SODA 2009. DOI of proceedings: 10.1137/1.9781611973068
 gottlob2004hypergraphs: 10.1137/S0097539701396807
 gurski2007line: 10.1016/j.disc.2007.01.020
 kreutzer2009algorithmic: arXiv:0902.3616 (not a DOI)
 gradel2002back: 10.1145/507382.507388
 kawarabayashi2012disjoint: 10.1016/j.jctb.2011.07.004
 bodlaender1996linear: 10.1145/167088.167161
 flum2002query: 10.1145/602220.602222
 bodlaender1997constructive: 10.1007/3540631658_217
 hlineny2007finding: 10.1137/070685920
 corneil2012polynomial: 10.1016/j.dam.2011.03.020
 gottlob2002hypertree: 10.1006/jcss.2001.1809
 fischl2016general: arXiv:1611.01090 (not a DOI)
 gottlob2005hypertree: 10.1007/11604686_1
 bodlaender2007combinatorial: 10.1093/comjnl/bxm037
 bodlaender2009treewidth: 10.1016/j.ic.2009.03.008
 seymour1994call: 10.1007/BF01215352
 gu2005optimal: 10.1145/1367064.1367070
 fellows2009clique: 10.1137/070687256
 ajtai2000closure: 10.1006/jcss.1999.1691
 seese1991structure: 10.1016/01680072(91)90054P
 courcelle2007vertex: 10.1016/j.jctb.2006.04.003
 fomin2009clique: No DOI. Full reference: F. V. Fomin, P. A. Golovach, D. Lokshtanov, S. Saurabh, Cliquewidth: on the price of generality, 2009. DOI of proceedings: 10.1137/1.9781611973068.
 fomin2010algorithmic: 10.1137/1.9781611973075.42
 courcelle2000linear: 10.1007/s002249910009
 frick2004complexity: 10.1016/j.apal.2004.01.007
 thatcher1968generalized: 10.1007/BF01691346
 ganian2010parse: 10.1016/j.dam.2009.10.018
 kreutzer2011lower: arXiv:1001.5019 (not a DOI)
 ganian2012lower: arXiv:1109.5804 (not a DOI)
 arnborg1991easy: 10.1016/01966774(91)90006K
 segoufin2012enumerating: 10.1145/2448496.2448498
 frick2001deciding: arXiv:cs/0004007 (not a DOI)
 dvorak2013testing: arXiv:1109.5036 (not a DOI)
 ganian2010better: arXiv:1006.5621 (not a DOI)
 brault2014understanding: arXiv:1405.6043 (not a DOI)
 papadimitriou1999complexity: 10.1006/jcss.1999.1626
 gottlob2001complexity: 10.1145/382780.382783
 yannakakis1981algorithms: I couldn't locate the article or a DOI. Full reference from gottlob2001complexity: M. Yannakakis, Algorithms for acyclic database schemes, Proc. VLDB, 1981. In C. Zaniolo and C. Delobel, eds, pages 8294.
 dalmau2004counting: 10.1016/j.tcs.2004.08.008
 grohe2007complexity: 10.1145/1206035.1206036
 joret2015dimension: arXiv:1406.3397 (not a DOI)
 joret2015tree: arXiv:1301.5271 (not a DOI)
 corneil2005relationship: 10.1137/S0097539701385351

However, in point (iii) in the list of hlineny2007width, the definition of "seriesparallel graph" can be misleading. I would rephrase point (iii) as: G has bw ≤2 iff G does not contain K4 as a minor (bodlaender1998partial, Theorem 10, (iii)) iff G has tw ≤2 (bodlaender1998partial, remark after Theorem 10) iff every biconnected component of G is a seriesparallel graph (bodlaender1998partial, Theorem 42). ↩

The original paper is corneil2005relationship: D. G. Corneil, U. Rotics, On the Relationship Between CliqueWidth and Treewidth, 2005, but it is not available without subscriptions. ↩

Observation 1 of makowsky2003tree does not include the fact that Tclosed implies Sclosed (hence Iclosed), but I believe this to be an oversight. ↩

If G′ is not fixed, it is NPhard, given two graphs G′ and G, to decide whether G′ is a minor of G; Wikipedia), ↩

While this indeed shows the existence of a quadratic test, to be able to construct this algorithm, we need to know the actual finite set of forbidden minors. However, the RobertsonSeymour proof is not constructive, and undecidability results are known about computing these families in general; see kreutzer2009algorithmic, section 5.4.). ↩